Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx3P48381 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.38
Rfx3P48381 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx3P48381 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx3P48381 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.71□□□□□ -0.38
Rfx3P48381 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx3P48381 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC12.71□□□□□ -0.38
Rfx3P48381 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC12.71□□□□□ -0.38
Rfx3P48381 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx3P48381 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC12.71□□□□□ -0.38
Rfx3P48381 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx3P48381 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Gm18737-201ENSMUST00000173594 937 ntBASIC12.7□□□□□ -0.38
Rfx3P48381 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Gm20553-201ENSMUST00000204205 844 ntBASIC12.7□□□□□ -0.38
Rfx3P48381 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Rfx3P48381 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Rfx3P48381 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Rfx3P48381 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC12.7□□□□□ -0.38
Rfx3P48381 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx3P48381 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx3P48381 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx3P48381 Gm12626-201ENSMUST00000117339 1983 ntBASIC12.69□□□□□ -0.38
Rfx3P48381 Gm12623-201ENSMUST00000119849 1983 ntBASIC12.69□□□□□ -0.38
Rfx3P48381 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.69□□□□□ -0.38
Rfx3P48381 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC12.69□□□□□ -0.38
Rfx3P48381 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 AC131187.1-201ENSMUST00000224567 809 ntBASIC12.69□□□□□ -0.38
Rfx3P48381 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx3P48381 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Rfx3P48381 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx3P48381 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx3P48381 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx3P48381 Nrn1-204ENSMUST00000224323 1779 ntBASIC12.69□□□□□ -0.38
Rfx3P48381 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx3P48381 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Rfx3P48381 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Rfx3P48381 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Rfx3P48381 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC12.68□□□□□ -0.38
Rfx3P48381 Gm4913-201ENSMUST00000117075 1290 ntBASIC12.68□□□□□ -0.38
Rfx3P48381 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx3P48381 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms