Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
Rfx1P48377 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
Rfx1P48377 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.79■□□□□ 0.28
Rfx1P48377 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Rfx1P48377 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Rfx1P48377 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.79■□□□□ 0.28
Rfx1P48377 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Mir5126-201ENSMUST00000175513 77 ntBASIC16.79■□□□□ 0.28
Rfx1P48377 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.79■□□□□ 0.28
Rfx1P48377 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC16.79■□□□□ 0.28
Rfx1P48377 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.79■□□□□ 0.28
Rfx1P48377 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 Gm9947-201ENSMUST00000067599 2920 ntBASIC16.79■□□□□ 0.28
Rfx1P48377 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx1P48377 AC126549.2-201ENSMUST00000223997 1976 ntBASIC16.78■□□□□ 0.28
Rfx1P48377 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.78■□□□□ 0.28
Rfx1P48377 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.78■□□□□ 0.28
Rfx1P48377 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC16.78■□□□□ 0.28
Rfx1P48377 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
Rfx1P48377 Gm5763-201ENSMUST00000155951 1530 ntBASIC16.78■□□□□ 0.28
Rfx1P48377 Gm37644-201ENSMUST00000192190 2270 ntBASIC16.78■□□□□ 0.28
Rfx1P48377 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Gm45003-201ENSMUST00000205875 2158 ntBASIC16.78■□□□□ 0.28
Rfx1P48377 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.78■□□□□ 0.28
Rfx1P48377 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
Rfx1P48377 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx1P48377 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC16.77■□□□□ 0.28
Rfx1P48377 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.77■□□□□ 0.28
Rfx1P48377 Gm17968-201ENSMUST00000194902 784 ntBASIC16.77■□□□□ 0.28
Rfx1P48377 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx1P48377 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.77■□□□□ 0.28
Rfx1P48377 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC16.77■□□□□ 0.27
Rfx1P48377 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
Rfx1P48377 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Rfx1P48377 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx1P48377 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms