Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col18a1P39061 Gm8908-201ENSMUST00000121633 1024 ntBASIC18.22■□□□□ 0.51
Col18a1P39061 Gm12208-201ENSMUST00000122004 163 ntBASIC18.22■□□□□ 0.51
Col18a1P39061 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col18a1P39061 Gm44405-201ENSMUST00000198952 126 ntBASIC18.22■□□□□ 0.51
Col18a1P39061 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC18.22■□□□□ 0.51
Col18a1P39061 Gm5950-201ENSMUST00000213337 772 ntBASIC18.22■□□□□ 0.51
Col18a1P39061 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col18a1P39061 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.22■□□□□ 0.51
Col18a1P39061 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col18a1P39061 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col18a1P39061 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col18a1P39061 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC18.21■□□□□ 0.51
Col18a1P39061 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Gm15897-201ENSMUST00000117770 1486 ntBASIC18.21■□□□□ 0.51
Col18a1P39061 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC18.21■□□□□ 0.51
Col18a1P39061 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC18.21■□□□□ 0.51
Col18a1P39061 Gm19963-201ENSMUST00000208413 1255 ntBASIC18.21■□□□□ 0.51
Col18a1P39061 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col18a1P39061 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col18a1P39061 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Col18a1P39061 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Col18a1P39061 Gm44775-201ENSMUST00000207266 1456 ntBASIC18.21■□□□□ 0.5
Col18a1P39061 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Col18a1P39061 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Col18a1P39061 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Gm8584-201ENSMUST00000171982 758 ntBASIC18.2■□□□□ 0.5
Col18a1P39061 Gm44545-201ENSMUST00000208262 746 ntBASIC18.2■□□□□ 0.5
Col18a1P39061 n-R5s77-201ENSMUST00000083757 119 ntBASIC18.2■□□□□ 0.5
Col18a1P39061 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Gm37411-201ENSMUST00000194180 2282 ntBASIC18.2■□□□□ 0.5
Col18a1P39061 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.2■□□□□ 0.5
Col18a1P39061 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Col18a1P39061 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col18a1P39061 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Gm27438-201ENSMUST00000183480 110 ntBASIC18.19■□□□□ 0.5
Col18a1P39061 Gm44551-201ENSMUST00000208804 171 ntBASIC18.19■□□□□ 0.5
Col18a1P39061 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC18.19■□□□□ 0.5
Col18a1P39061 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col18a1P39061 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Col18a1P39061 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Selenot-ps-201ENSMUST00000119098 593 ntBASIC18.19■□□□□ 0.5
Col18a1P39061 Gm13813-201ENSMUST00000120998 787 ntBASIC18.19■□□□□ 0.5
Col18a1P39061 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC18.19■□□□□ 0.5
Col18a1P39061 Gm25043-201ENSMUST00000158604 212 ntBASIC18.19■□□□□ 0.5
Col18a1P39061 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col18a1P39061 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Gm44126-201ENSMUST00000204831 514 ntBASIC18.19■□□□□ 0.5
Col18a1P39061 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC18.19■□□□□ 0.5
Col18a1P39061 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col18a1P39061 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Col18a1P39061 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Col18a1P39061 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC18.18■□□□□ 0.5
Col18a1P39061 Gm22121-201ENSMUST00000175148 54 ntBASIC18.18■□□□□ 0.5
Col18a1P39061 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC18.18■□□□□ 0.5
Col18a1P39061 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Col18a1P39061 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC18.18■□□□□ 0.5
Col18a1P39061 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC18.18■□□□□ 0.5
Col18a1P39061 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms