Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.99□□□□□ -0.33
Cd40lgP27548 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.99□□□□□ -0.33
Cd40lgP27548 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.99□□□□□ -0.33
Cd40lgP27548 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Gm7336-201ENSMUST00000107041 1232 ntBASIC12.98□□□□□ -0.33
Cd40lgP27548 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC12.98□□□□□ -0.33
Cd40lgP27548 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC12.98□□□□□ -0.33
Cd40lgP27548 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC12.98□□□□□ -0.33
Cd40lgP27548 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Cd40lgP27548 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.98□□□□□ -0.33
Cd40lgP27548 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.98□□□□□ -0.33
Cd40lgP27548 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cd40lgP27548 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.97□□□□□ -0.33
Cd40lgP27548 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC12.97□□□□□ -0.33
Cd40lgP27548 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cd40lgP27548 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.97□□□□□ -0.33
Cd40lgP27548 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC12.97□□□□□ -0.33
Cd40lgP27548 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC12.97□□□□□ -0.33
Cd40lgP27548 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC12.97□□□□□ -0.33
Cd40lgP27548 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC12.97□□□□□ -0.33
Cd40lgP27548 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC12.97□□□□□ -0.33
Cd40lgP27548 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.97□□□□□ -0.33
Cd40lgP27548 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Cd40lgP27548 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cd40lgP27548 Gm42632-201ENSMUST00000201707 2411 ntBASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms