Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Cd63-ps-201ENSMUST00000145417 875 ntBASIC13.37□□□□□ -0.27
Msx1P13297 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC13.37□□□□□ -0.27
Msx1P13297 2810403D21Rik-207ENSMUST00000152089 852 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Gm16107-201ENSMUST00000162523 862 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Mir7085-201ENSMUST00000184353 66 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Gm46209-201ENSMUST00000217912 553 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Gm35638-201ENSMUST00000220724 652 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.37□□□□□ -0.27
Msx1P13297 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Msx1P13297 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Msx1P13297 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Msx1P13297 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Mir1897-201ENSMUST00000122581 272 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Mir1938-201ENSMUST00000158746 100 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Gm3436-201ENSMUST00000179930 840 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.36□□□□□ -0.27
Msx1P13297 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Gm9899-201ENSMUST00000065519 555 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.36□□□□□ -0.27
Msx1P13297 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Gm43205-201ENSMUST00000198622 1968 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC13.36□□□□□ -0.27
Msx1P13297 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Msx1P13297 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Msx1P13297 Ldb3-207ENSMUST00000227819 1499 ntBASIC13.36□□□□□ -0.27
Msx1P13297 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Gm6756-201ENSMUST00000180647 1620 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Msx1P13297 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Msx1P13297 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC13.35□□□□□ -0.27
Msx1P13297 Gm15824-201ENSMUST00000119516 955 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Msx1P13297 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Msx1P13297 Gm19080-201ENSMUST00000196082 550 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Gm42612-201ENSMUST00000197986 623 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Gm43170-201ENSMUST00000199827 612 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Gm43703-201ENSMUST00000200523 763 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Irf2-209ENSMUST00000210218 535 ntTSL 3 BASIC13.35□□□□□ -0.27
Msx1P13297 Gm45668-201ENSMUST00000211271 493 ntBASIC13.35□□□□□ -0.27
Msx1P13297 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC13.35□□□□□ -0.27
Msx1P13297 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Msx1P13297 Ksr1-207ENSMUST00000226282 5260 ntBASIC13.35□□□□□ -0.27
Msx1P13297 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC13.35□□□□□ -0.27
Msx1P13297 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms