Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC10.99□□□□□ -0.65
Hoxd3P09027 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hoxd3P09027 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Hoxd3P09027 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hoxd3P09027 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Hoxd3P09027 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC10.99□□□□□ -0.65
Hoxd3P09027 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC10.99□□□□□ -0.65
Hoxd3P09027 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hoxd3P09027 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Hoxd3P09027 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Gm24694-201ENSMUST00000180054 110 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Gm27663-201ENSMUST00000184839 110 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Gm33320-201ENSMUST00000192232 530 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Ighv1-25-201ENSMUST00000195638 345 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Gm44855-201ENSMUST00000205725 362 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Gm18377-201ENSMUST00000215141 607 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 AC124732.1-201ENSMUST00000221551 910 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 AC155729.1-201ENSMUST00000227758 544 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Syt7-205ENSMUST00000224135 1557 ntBASIC10.98□□□□□ -0.65
Hoxd3P09027 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
Hoxd3P09027 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hoxd3P09027 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Gm11960-202ENSMUST00000181063 2858 ntBASIC10.97□□□□□ -0.65
Hoxd3P09027 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Xlr-203ENSMUST00000114810 984 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Gm7820-201ENSMUST00000121012 1052 ntBASIC10.97□□□□□ -0.65
Hoxd3P09027 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Gm23547-201ENSMUST00000158210 271 ntBASIC10.97□□□□□ -0.65
Hoxd3P09027 Gm21147-201ENSMUST00000186046 913 ntBASIC10.97□□□□□ -0.65
Hoxd3P09027 CT025561.1-201ENSMUST00000214972 674 ntBASIC10.97□□□□□ -0.65
Hoxd3P09027 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Gm20445-201ENSMUST00000061905 565 ntBASIC10.97□□□□□ -0.65
Hoxd3P09027 Xlr-201ENSMUST00000067763 1032 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Hoxd3P09027 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Atg10-201ENSMUST00000022119 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hoxd3P09027 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms