Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm45630-201ENSMUST00000210243 1911 ntBASIC11.64□□□□□ -0.55
Hmgb3O54879 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Hmgb3O54879 AC130669.1-201ENSMUST00000228537 1672 ntBASIC11.63□□□□□ -0.55
Hmgb3O54879 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC11.63□□□□□ -0.55
Hmgb3O54879 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Hmgb3O54879 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Pcdh18-201ENSMUST00000035931 5168 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC11.63□□□□□ -0.55
Hmgb3O54879 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Hmgb3O54879 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Hmgb3O54879 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Hmgb3O54879 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Gm45003-201ENSMUST00000205875 2158 ntBASIC11.62□□□□□ -0.55
Hmgb3O54879 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Gm12644-201ENSMUST00000119935 606 ntBASIC11.62□□□□□ -0.55
Hmgb3O54879 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC11.62□□□□□ -0.55
Hmgb3O54879 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 AC159106.1-201ENSMUST00000224421 690 ntBASIC11.62□□□□□ -0.55
Hmgb3O54879 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Hmgb3O54879 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Hmgb3O54879 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Hmgb3O54879 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm38102-201ENSMUST00000192791 1935 ntBASIC11.61□□□□□ -0.55
Hmgb3O54879 Ankrd52-201ENSMUST00000014642 6620 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm37584-201ENSMUST00000193595 1290 ntBASIC11.61□□□□□ -0.55
Hmgb3O54879 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 105.3 ms