Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 AC133598.3-202ENSMUST00000224219 531 ntBASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Pcdh1F7BJK1 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Gm27920-201ENSMUST00000183953 96 ntBASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Pcdh1F7BJK1 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Gm17968-201ENSMUST00000194902 784 ntBASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Pcdh1F7BJK1 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms