Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Ighv1-25-201ENSMUST00000195638 345 ntBASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Gm43703-201ENSMUST00000200523 763 ntBASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Wdyhv1-203ENSMUST00000226889 394 ntBASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Vps28Q9D1C8 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Gm4875-201ENSMUST00000118257 786 ntBASIC14.42□□□□□ -0.1
Vps28Q9D1C8 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Gm33320-201ENSMUST00000192232 530 ntBASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Vps28Q9D1C8 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Gm27838-201ENSMUST00000184829 128 ntBASIC14.41□□□□□ -0.1
Vps28Q9D1C8 AC238811.1-201ENSMUST00000225302 441 ntBASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Vps28Q9D1C8 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms