Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Celf4-206ENSMUST00000224553 1729 ntBASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Gm13453-201ENSMUST00000118708 357 ntBASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 AC140375.2-201ENSMUST00000225283 584 ntBASIC15.77■□□□□ 0.12
Smc1aQ9CU62 CT009510.1-201ENSMUST00000227972 270 ntBASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Smc1aQ9CU62 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Smc1aQ9CU62 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Wdyhv1-203ENSMUST00000226889 394 ntBASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.76■□□□□ 0.11
Smc1aQ9CU62 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smc1aQ9CU62 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Gm15483-201ENSMUST00000120338 456 ntBASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Gm27989-201ENSMUST00000184721 107 ntBASIC15.75■□□□□ 0.11
Smc1aQ9CU62 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms