Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ushbp1Q8R370 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 AC121801.1-201ENSMUST00000225363 1899 ntBASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Gm6539-201ENSMUST00000119157 1064 ntBASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Gm9794-201ENSMUST00000202370 423 ntBASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ushbp1Q8R370 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Gm44344-201ENSMUST00000200287 129 ntBASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ushbp1Q8R370 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Ushbp1Q8R370 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 AC115735.4-201ENSMUST00000227460 1944 ntBASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms