Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm12020-201ENSMUST00000119030 2042 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Cd63-ps-201ENSMUST00000145417 875 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm27321-201ENSMUST00000185021 205 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm37714-201ENSMUST00000194742 342 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm7775-201ENSMUST00000218871 853 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm18027-201ENSMUST00000218947 619 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm9063-201ENSMUST00000223299 582 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Brf1Q8CFK2 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Gm15460-201ENSMUST00000118147 391 ntBASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Gm15920-201ENSMUST00000118998 402 ntBASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Brf1Q8CFK2 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms