Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gm5069-202ENSMUST00000192714 1011 ntBASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp40Q8BWR4 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Gm11960-202ENSMUST00000181063 2858 ntBASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Gm8584-201ENSMUST00000171982 758 ntBASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp40Q8BWR4 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Gm8652-201ENSMUST00000181363 964 ntBASIC19.19■□□□□ 0.66
Usp40Q8BWR4 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Gm45504-201ENSMUST00000211407 2107 ntBASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp40Q8BWR4 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Gm6983-201ENSMUST00000214912 628 ntBASIC19.18■□□□□ 0.66
Usp40Q8BWR4 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Gm43598-201ENSMUST00000202482 2479 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms