Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Rnf220Q6PDX6 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gm4780-202ENSMUST00000215200 2644 ntBASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.34□□□□□ -0.27
Rnf220Q6PDX6 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Rnf220Q6PDX6 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.33□□□□□ -0.27
Rnf220Q6PDX6 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC13.33□□□□□ -0.27
Rnf220Q6PDX6 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Rnf220Q6PDX6 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Gm2308-201ENSMUST00000166539 1004 ntBASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 AC159301.1-201ENSMUST00000225130 1182 ntBASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 AC154757.1-201ENSMUST00000228289 336 ntBASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms