Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm9229-201ENSMUST00000222777 126 ntBASIC17.28■□□□□ 0.36
Trim27Q62158 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim27Q62158 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Trim27Q62158 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Trim27Q62158 Gm5320-201ENSMUST00000207163 1519 ntBASIC17.27■□□□□ 0.36
Trim27Q62158 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim27Q62158 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim27Q62158 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trim27Q62158 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trim27Q62158 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Gm7820-201ENSMUST00000121012 1052 ntBASIC17.27■□□□□ 0.36
Trim27Q62158 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim27Q62158 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trim27Q62158 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim27Q62158 AC159649.2-201ENSMUST00000222984 3223 ntBASIC17.27■□□□□ 0.36
Trim27Q62158 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Trim27Q62158 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 AC114543.1-201ENSMUST00000226451 1558 ntBASIC17.27■□□□□ 0.35
Trim27Q62158 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim27Q62158 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim27Q62158 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Gm42872-201ENSMUST00000200026 1967 ntBASIC17.26■□□□□ 0.35
Trim27Q62158 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim27Q62158 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim27Q62158 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Trim27Q62158 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim27Q62158 Gm7775-201ENSMUST00000218871 853 ntBASIC17.26■□□□□ 0.35
Trim27Q62158 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Gm5867-201ENSMUST00000063197 592 ntBASIC17.26■□□□□ 0.35
Trim27Q62158 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Trim27Q62158 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Trim27Q62158 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim27Q62158 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim27Q62158 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Trim27Q62158 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim27Q62158 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim27Q62158 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC17.25■□□□□ 0.35
Trim27Q62158 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Trim27Q62158 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Trim27Q62158 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim27Q62158 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Gm14767-201ENSMUST00000121559 586 ntBASIC17.25■□□□□ 0.35
Trim27Q62158 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Trim27Q62158 Cd63-ps-201ENSMUST00000145417 875 ntBASIC17.25■□□□□ 0.35
Trim27Q62158 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC17.25■□□□□ 0.35
Trim27Q62158 Gm17837-201ENSMUST00000186435 985 ntBASIC17.25■□□□□ 0.35
Trim27Q62158 Gm29741-201ENSMUST00000192667 421 ntBASIC17.25■□□□□ 0.35
Trim27Q62158 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.25■□□□□ 0.35
Trim27Q62158 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.25■□□□□ 0.35
Trim27Q62158 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim27Q62158 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms