Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh6P54276 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh6P54276 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh6P54276 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh6P54276 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC17.72■□□□□ 0.43
Msh6P54276 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh6P54276 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Msh6P54276 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Msh6P54276 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Gm42853-201ENSMUST00000201273 1387 ntBASIC17.71■□□□□ 0.43
Msh6P54276 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Msh6P54276 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Msh6P54276 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Msh6P54276 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Gm13689-201ENSMUST00000119360 685 ntBASIC17.71■□□□□ 0.43
Msh6P54276 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC17.71■□□□□ 0.43
Msh6P54276 Gm2445-201ENSMUST00000182798 989 ntBASIC17.71■□□□□ 0.43
Msh6P54276 Gm5276-201ENSMUST00000196683 1047 ntBASIC17.71■□□□□ 0.43
Msh6P54276 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Msh6P54276 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC17.71■□□□□ 0.43
Msh6P54276 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msh6P54276 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Msh6P54276 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Msh6P54276 Gm11661-201ENSMUST00000121761 1327 ntBASIC17.7■□□□□ 0.42
Msh6P54276 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC17.7■□□□□ 0.42
Msh6P54276 Gm13612-201ENSMUST00000119276 390 ntBASIC17.7■□□□□ 0.42
Msh6P54276 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Msh6P54276 Gm9299-201ENSMUST00000206392 1140 ntBASIC17.7■□□□□ 0.42
Msh6P54276 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Msh6P54276 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Nupl1-207ENSMUST00000225311 2475 ntBASIC17.7■□□□□ 0.42
Msh6P54276 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Msh6P54276 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msh6P54276 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC17.69■□□□□ 0.42
Msh6P54276 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC17.69■□□□□ 0.42
Msh6P54276 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC17.69■□□□□ 0.42
Msh6P54276 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Msh6P54276 Gm27514-201ENSMUST00000183692 110 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Gm29741-201ENSMUST00000192667 421 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Gm43179-201ENSMUST00000198797 275 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Gm44974-201ENSMUST00000206387 1279 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Gm6983-201ENSMUST00000214912 628 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC17.69■□□□□ 0.42
Msh6P54276 AC126253.1-201ENSMUST00000227974 824 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Gm12020-201ENSMUST00000119030 2042 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
Msh6P54276 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Msh6P54276 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC17.69■□□□□ 0.42
Msh6P54276 Gm29340-201ENSMUST00000188763 3854 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Gm21038-201ENSMUST00000222205 1383 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msh6P54276 Gm13050-201ENSMUST00000122149 1345 ntBASIC17.69■□□□□ 0.42
Msh6P54276 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msh6P54276 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msh6P54276 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msh6P54276 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC17.68■□□□□ 0.42
Msh6P54276 Gm29649-201ENSMUST00000185649 419 ntBASIC17.68■□□□□ 0.42
Msh6P54276 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msh6P54276 AC154171.1-201ENSMUST00000224610 643 ntBASIC17.68■□□□□ 0.42
Msh6P54276 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms