Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC13.32□□□□□ -0.28
Cdx2P43241 Gm14730-201ENSMUST00000122378 1045 ntBASIC13.32□□□□□ -0.28
Cdx2P43241 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC13.32□□□□□ -0.28
Cdx2P43241 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC13.32□□□□□ -0.28
Cdx2P43241 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC13.32□□□□□ -0.28
Cdx2P43241 Gm24196-201ENSMUST00000179161 110 ntBASIC13.32□□□□□ -0.28
Cdx2P43241 Gm44397-201ENSMUST00000195950 113 ntBASIC13.32□□□□□ -0.28
Cdx2P43241 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.32□□□□□ -0.28
Cdx2P43241 Gm40466-201ENSMUST00000212174 422 ntBASIC13.32□□□□□ -0.28
Cdx2P43241 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.32□□□□□ -0.28
Cdx2P43241 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cdx2P43241 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC13.32□□□□□ -0.28
Cdx2P43241 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC13.32□□□□□ -0.28
Cdx2P43241 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cdx2P43241 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Cdx2P43241 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.31□□□□□ -0.28
Cdx2P43241 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC13.31□□□□□ -0.28
Cdx2P43241 Gm24644-201ENSMUST00000157114 139 ntBASIC13.31□□□□□ -0.28
Cdx2P43241 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC13.31□□□□□ -0.28
Cdx2P43241 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC13.31□□□□□ -0.28
Cdx2P43241 Gm38223-201ENSMUST00000194484 695 ntBASIC13.31□□□□□ -0.28
Cdx2P43241 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC13.31□□□□□ -0.28
Cdx2P43241 AC166997.1-201ENSMUST00000225122 572 ntBASIC13.31□□□□□ -0.28
Cdx2P43241 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Cdx2P43241 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Cdx2P43241 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC13.31□□□□□ -0.28
Cdx2P43241 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cdx2P43241 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 AC161252.3-201ENSMUST00000225465 1549 ntBASIC13.3□□□□□ -0.28
Cdx2P43241 Gm44443-201ENSMUST00000204396 5633 ntBASIC13.3□□□□□ -0.28
Cdx2P43241 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Gm12384-201ENSMUST00000119228 919 ntBASIC13.3□□□□□ -0.28
Cdx2P43241 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC13.3□□□□□ -0.28
Cdx2P43241 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC13.3□□□□□ -0.28
Cdx2P43241 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC13.3□□□□□ -0.28
Cdx2P43241 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC13.3□□□□□ -0.28
Cdx2P43241 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Cdx2P43241 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13.3□□□□□ -0.28
Cdx2P43241 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Cdx2P43241 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cdx2P43241 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms