Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lmx1bO88609 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lmx1bO88609 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Gm9522-201ENSMUST00000182394 926 ntBASIC12.77□□□□□ -0.37
Lmx1bO88609 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Gm6916-202ENSMUST00000205523 195 ntBASIC12.77□□□□□ -0.37
Lmx1bO88609 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.77□□□□□ -0.37
Lmx1bO88609 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Lmx1bO88609 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lmx1bO88609 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Gm4081-201ENSMUST00000195287 1838 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Gm10275-202ENSMUST00000168697 495 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC12.76□□□□□ -0.37
Lmx1bO88609 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 AA619741-201ENSMUST00000195095 646 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Gm10275-201ENSMUST00000092620 635 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Lmx1bO88609 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 BC001981-202ENSMUST00000191393 1545 ntBASIC12.76□□□□□ -0.37
Lmx1bO88609 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lmx1bO88609 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Lmx1bO88609 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
Lmx1bO88609 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC12.75□□□□□ -0.37
Lmx1bO88609 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.75□□□□□ -0.37
Lmx1bO88609 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Gm12859-201ENSMUST00000117834 427 ntBASIC12.75□□□□□ -0.37
Lmx1bO88609 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.75□□□□□ -0.37
Lmx1bO88609 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Lmx1bO88609 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Lmx1bO88609 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
Lmx1bO88609 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.75□□□□□ -0.37
Lmx1bO88609 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Lmx1bO88609 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 82.6 ms