Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 AC121805.2-201ENSMUST00000218808 2538 ntBASIC11.66□□□□□ -0.54
Hmgb3O54879 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Gm9947-201ENSMUST00000067599 2920 ntBASIC11.66□□□□□ -0.54
Hmgb3O54879 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC11.66□□□□□ -0.54
Hmgb3O54879 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Itgb8-201ENSMUST00000026360 8403 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Gm9726-201ENSMUST00000180321 678 ntBASIC11.65□□□□□ -0.54
Hmgb3O54879 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Gm10252-201ENSMUST00000209541 832 ntBASIC11.65□□□□□ -0.54
Hmgb3O54879 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Spcs1-207ENSMUST00000228767 1008 ntBASIC11.65□□□□□ -0.54
Hmgb3O54879 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Gm38346-201ENSMUST00000192379 2639 ntBASIC11.65□□□□□ -0.54
Hmgb3O54879 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC11.65□□□□□ -0.54
Hmgb3O54879 Gm6198-201ENSMUST00000191337 2929 ntBASIC11.65□□□□□ -0.54
Hmgb3O54879 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Hmgb3O54879 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Hmgb3O54879 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Hmgb3O54879 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Hmgb3O54879 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Hmgb3O54879 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC11.64□□□□□ -0.55
Hmgb3O54879 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Hmgb3O54879 CT010506.4-201ENSMUST00000225457 351 ntBASIC11.64□□□□□ -0.55
Hmgb3O54879 Otx2os1-206ENSMUST00000228153 787 ntBASIC11.64□□□□□ -0.55
Hmgb3O54879 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Hivep2-204ENSMUST00000187083 9268 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Olfr1219-204ENSMUST00000215225 5865 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Hmgb3O54879 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Hmgb3O54879 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC11.64□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 283.3 ms