Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Gm37171-201ENSMUST00000192636 1185 ntBASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm29310-201ENSMUST00000185468 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21825-201ENSMUST00000185728 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm29109-201ENSMUST00000185895 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21896-201ENSMUST00000186520 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21873-201ENSMUST00000186728 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21794-201ENSMUST00000187056 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21880-201ENSMUST00000187275 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21826-201ENSMUST00000187451 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21198-201ENSMUST00000188393 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21749-201ENSMUST00000189343 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21901-201ENSMUST00000189568 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm29424-201ENSMUST00000189716 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm28599-201ENSMUST00000189838 694 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21867-201ENSMUST00000189917 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm29269-201ENSMUST00000190087 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21722-201ENSMUST00000190153 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm28423-201ENSMUST00000190701 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21899-201ENSMUST00000190745 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21910-201ENSMUST00000191163 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21849-201ENSMUST00000191571 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm28678-201ENSMUST00000191593 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm20910-201ENSMUST00000193268 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Gm21871-201ENSMUST00000194621 696 ntBASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Prpf40aQ9R1C7 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Gm27430-201ENSMUST00000184585 107 ntBASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Gm44333-201ENSMUST00000197168 107 ntBASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Prpf40aQ9R1C7 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.52■□□□□ 0.07
Prpf40aQ9R1C7 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms