Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Gm24526-201ENSMUST00000082921 158 ntBASIC16.45■□□□□ 0.22
Scn11aQ9R053 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Gm7584-201ENSMUST00000175829 940 ntBASIC16.44■□□□□ 0.22
Scn11aQ9R053 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC16.44■□□□□ 0.22
Scn11aQ9R053 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn11aQ9R053 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm8213-201ENSMUST00000118191 441 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm4271-201ENSMUST00000174444 973 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm29127-201ENSMUST00000188304 517 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm18753-201ENSMUST00000201000 566 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm18630-201ENSMUST00000222109 1397 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm15782-201ENSMUST00000121073 445 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Gm7561-201ENSMUST00000211203 886 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 AC154276.1-201ENSMUST00000228874 1299 ntBASIC16.43■□□□□ 0.22
Scn11aQ9R053 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Scn11aQ9R053 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Gm10156-201ENSMUST00000122364 462 ntBASIC16.42■□□□□ 0.22
Scn11aQ9R053 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Gm22331-201ENSMUST00000158066 136 ntBASIC16.42■□□□□ 0.22
Scn11aQ9R053 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Gm27331-201ENSMUST00000183705 60 ntBASIC16.42■□□□□ 0.22
Scn11aQ9R053 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Scn11aQ9R053 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm14350-201ENSMUST00000116642 640 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms