Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim54Q9ERP3 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Gm42690-201ENSMUST00000197921 1836 ntBASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Gm12341-201ENSMUST00000119724 503 ntBASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Gm4804-201ENSMUST00000182234 999 ntBASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trim54Q9ERP3 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Gm5279-201ENSMUST00000199575 745 ntBASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Gm25857-201ENSMUST00000082788 129 ntBASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms