Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Gm6458-201ENSMUST00000211573 635 ntBASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 AC131997.1-201ENSMUST00000228611 1229 ntBASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Gm19353-201ENSMUST00000184561 445 ntBASIC18.78■□□□□ 0.6
Scn4aQ9ER60 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scn4aQ9ER60 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scn4aQ9ER60 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scn4aQ9ER60 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gm17391-201ENSMUST00000171036 126 ntBASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Rn7s6-201ENSMUST00000175005 291 ntBASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Gm19287-201ENSMUST00000203190 358 ntBASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 AC174797.2-202ENSMUST00000225729 568 ntBASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scn4aQ9ER60 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Gm20632-201ENSMUST00000176760 2427 ntBASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Gm11930-201ENSMUST00000117788 190 ntBASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Gm13888-201ENSMUST00000119148 422 ntBASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Arhgef33-207ENSMUST00000224966 490 ntBASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scn4aQ9ER60 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gm17040-202ENSMUST00000170597 889 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms