Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim11Q99PQ2 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim11Q99PQ2 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Trim11Q99PQ2 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Gm13015-201ENSMUST00000118674 204 ntBASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 BC001981-202ENSMUST00000191393 1545 ntBASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim11Q99PQ2 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Gm13823-201ENSMUST00000119930 345 ntBASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Gm43125-201ENSMUST00000201724 730 ntBASIC16.07■□□□□ 0.16
Trim11Q99PQ2 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Gm5648-201ENSMUST00000122244 1587 ntBASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 AC166491.1-201ENSMUST00000227053 2308 ntBASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Trim11Q99PQ2 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Trim11Q99PQ2 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms