Protein–RNA interactions for Protein: Q99KU0

Vmp1, Vacuole membrane protein 1, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vmp1Q99KU0 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Vmp1Q99KU0 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vmp1Q99KU0 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vmp1Q99KU0 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.64□□□□□ -0.23
Vmp1Q99KU0 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Gm43474-201ENSMUST00000196415 774 ntBASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.63□□□□□ -0.23
Vmp1Q99KU0 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vmp1Q99KU0 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gm6944-201ENSMUST00000182449 1006 ntBASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gm27920-201ENSMUST00000183953 96 ntBASIC13.62□□□□□ -0.23
Vmp1Q99KU0 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 AC131710.1-201ENSMUST00000228336 990 ntBASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vmp1Q99KU0 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 AC164565.1-201ENSMUST00000217520 1484 ntBASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Gm2810-201ENSMUST00000118681 990 ntBASIC13.61□□□□□ -0.23
Vmp1Q99KU0 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vmp1Q99KU0 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms