Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rab11fip3Q8CHD8 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rab11fip3Q8CHD8 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Rab11fip3Q8CHD8 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rab11fip3Q8CHD8 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rab11fip3Q8CHD8 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rab11fip3Q8CHD8 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Gm11524-201ENSMUST00000119349 807 ntBASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Gm19078-201ENSMUST00000206311 727 ntBASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 AC155252.1-201ENSMUST00000226462 1208 ntBASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 CT030704.2-201ENSMUST00000228887 494 ntBASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Rab11fip3Q8CHD8 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 AC148324.1-201ENSMUST00000219034 4240 ntBASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gm28911-201ENSMUST00000188837 117 ntBASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gm18187-201ENSMUST00000196476 984 ntBASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gm38037-201ENSMUST00000192600 1624 ntBASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rab11fip3Q8CHD8 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Gm43094-201ENSMUST00000196549 921 ntBASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Gm4971-201ENSMUST00000205991 1108 ntBASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Mir497b-201ENSMUST00000093601 125 ntBASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rab11fip3Q8CHD8 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rab11fip3Q8CHD8 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rab11fip3Q8CHD8 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rab11fip3Q8CHD8 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms