Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC18.18■□□□□ 0.5
Trim28Q62318 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC18.18■□□□□ 0.5
Trim28Q62318 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Gm5356-201ENSMUST00000093326 615 ntBASIC18.18■□□□□ 0.5
Trim28Q62318 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim28Q62318 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Gm26513-201ENSMUST00000181802 2489 ntBASIC18.17■□□□□ 0.5
Trim28Q62318 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim28Q62318 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim28Q62318 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trim28Q62318 Gm5069-202ENSMUST00000192714 1011 ntBASIC18.17■□□□□ 0.5
Trim28Q62318 Gm44397-201ENSMUST00000195950 113 ntBASIC18.17■□□□□ 0.5
Trim28Q62318 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim28Q62318 Gm6266-201ENSMUST00000203844 806 ntBASIC18.17■□□□□ 0.5
Trim28Q62318 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 AC131997.1-201ENSMUST00000228611 1229 ntBASIC18.17■□□□□ 0.5
Trim28Q62318 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim28Q62318 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Nupl1-207ENSMUST00000225311 2475 ntBASIC18.16■□□□□ 0.5
Trim28Q62318 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim28Q62318 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Trim28Q62318 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Gm14127-201ENSMUST00000117906 678 ntBASIC18.16■□□□□ 0.5
Trim28Q62318 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC18.16■□□□□ 0.5
Trim28Q62318 Mir7085-201ENSMUST00000184353 66 ntBASIC18.16■□□□□ 0.5
Trim28Q62318 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim28Q62318 Gm38223-201ENSMUST00000194484 695 ntBASIC18.16■□□□□ 0.5
Trim28Q62318 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim28Q62318 Gm10012-201ENSMUST00000078252 192 ntBASIC18.16■□□□□ 0.5
Trim28Q62318 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim28Q62318 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim28Q62318 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim28Q62318 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim28Q62318 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Mir692-1-201ENSMUST00000102263 109 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim28Q62318 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC18.15■□□□□ 0.5
Trim28Q62318 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim28Q62318 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC18.15■□□□□ 0.5
Trim28Q62318 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim28Q62318 Gm44719-201ENSMUST00000206404 149 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 Gm17794-201ENSMUST00000220252 955 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 Gm17330-201ENSMUST00000221047 165 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms