Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf180Q3U827 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf180Q3U827 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Rnf180Q3U827 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Rnf180Q3U827 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rnf180Q3U827 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Mir698-201ENSMUST00000102164 109 ntBASIC16.29■□□□□ 0.2
Rnf180Q3U827 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Gm11637-201ENSMUST00000120601 592 ntBASIC16.29■□□□□ 0.2
Rnf180Q3U827 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Gm17889-201ENSMUST00000198410 598 ntBASIC16.29■□□□□ 0.2
Rnf180Q3U827 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Gm19963-201ENSMUST00000208413 1255 ntBASIC16.29■□□□□ 0.2
Rnf180Q3U827 AC173210.1-201ENSMUST00000222341 1131 ntBASIC16.29■□□□□ 0.2
Rnf180Q3U827 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rnf180Q3U827 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC16.28■□□□□ 0.2
Rnf180Q3U827 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Gm44064-201ENSMUST00000204964 1087 ntBASIC16.28■□□□□ 0.2
Rnf180Q3U827 Gm4768-201ENSMUST00000206199 686 ntBASIC16.28■□□□□ 0.2
Rnf180Q3U827 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.28■□□□□ 0.2
Rnf180Q3U827 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rnf180Q3U827 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 AC161537.1-201ENSMUST00000226199 1015 ntBASIC16.27■□□□□ 0.2
Rnf180Q3U827 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rnf180Q3U827 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.27■□□□□ 0.19
Rnf180Q3U827 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf180Q3U827 Gm44999-201ENSMUST00000207456 1493 ntBASIC16.27■□□□□ 0.19
Rnf180Q3U827 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf180Q3U827 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Rnf180Q3U827 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf180Q3U827 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rnf180Q3U827 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms