Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Gm17150-201ENSMUST00000165577 381 ntBASIC12.17□□□□□ -0.46
Nkx3-1P97436 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC12.17□□□□□ -0.46
Nkx3-1P97436 Gm6266-201ENSMUST00000203844 806 ntBASIC12.17□□□□□ -0.46
Nkx3-1P97436 Gm44719-201ENSMUST00000206404 149 ntBASIC12.17□□□□□ -0.46
Nkx3-1P97436 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.17□□□□□ -0.46
Nkx3-1P97436 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Gm37736-201ENSMUST00000193564 2802 ntBASIC12.16□□□□□ -0.46
Nkx3-1P97436 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.16□□□□□ -0.46
Nkx3-1P97436 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.16□□□□□ -0.46
Nkx3-1P97436 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Ighv8-14-201ENSMUST00000196781 358 ntBASIC12.16□□□□□ -0.46
Nkx3-1P97436 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.16□□□□□ -0.46
Nkx3-1P97436 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Nkx3-1P97436 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Gm15678-201ENSMUST00000117573 960 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Mir7085-201ENSMUST00000184353 66 ntBASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms