Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC15.53■□□□□ 0.08
Hmgb1P63158 Gm15957-201ENSMUST00000118893 974 ntBASIC15.53■□□□□ 0.08
Hmgb1P63158 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.53■□□□□ 0.08
Hmgb1P63158 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.53■□□□□ 0.08
Hmgb1P63158 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
Hmgb1P63158 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.53■□□□□ 0.08
Hmgb1P63158 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.53■□□□□ 0.08
Hmgb1P63158 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb1P63158 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Hmgb1P63158 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Hmgb1P63158 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC15.52■□□□□ 0.08
Hmgb1P63158 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm29310-201ENSMUST00000185468 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21825-201ENSMUST00000185728 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm29109-201ENSMUST00000185895 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21896-201ENSMUST00000186520 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21873-201ENSMUST00000186728 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21794-201ENSMUST00000187056 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21880-201ENSMUST00000187275 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21826-201ENSMUST00000187451 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21198-201ENSMUST00000188393 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21749-201ENSMUST00000189343 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21901-201ENSMUST00000189568 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm29424-201ENSMUST00000189716 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm28599-201ENSMUST00000189838 694 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21867-201ENSMUST00000189917 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm29269-201ENSMUST00000190087 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21722-201ENSMUST00000190153 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm28423-201ENSMUST00000190701 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21899-201ENSMUST00000190745 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21910-201ENSMUST00000191163 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21849-201ENSMUST00000191571 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm28678-201ENSMUST00000191593 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm20910-201ENSMUST00000193268 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Gm21871-201ENSMUST00000194621 696 ntBASIC15.52■□□□□ 0.08
Hmgb1P63158 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Hmgb1P63158 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb1P63158 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Hmgb1P63158 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Hmgb1P63158 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Hmgb1P63158 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Hmgb1P63158 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Hmgb1P63158 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Hmgb1P63158 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Hmgb1P63158 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb1P63158 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb1P63158 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb1P63158 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.51■□□□□ 0.07
Hmgb1P63158 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.51■□□□□ 0.07
Hmgb1P63158 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC15.51■□□□□ 0.07
Hmgb1P63158 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC15.51■□□□□ 0.07
Hmgb1P63158 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.51■□□□□ 0.07
Hmgb1P63158 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
Hmgb1P63158 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb1P63158 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms