Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm5184-201ENSMUST00000220417 1702 ntBASIC11.55□□□□□ -0.56
Sdc1P18828 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Sdc1P18828 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC11.54□□□□□ -0.56
Sdc1P18828 Gm7889-201ENSMUST00000185591 958 ntBASIC11.54□□□□□ -0.56
Sdc1P18828 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Sdc1P18828 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Sdc1P18828 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Sdc1P18828 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC11.53□□□□□ -0.56
Sdc1P18828 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Gm13836-201ENSMUST00000121159 501 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 Gm20472-201ENSMUST00000174403 1240 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Gm5712-201ENSMUST00000199748 1043 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Gm43799-201ENSMUST00000201845 579 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Gm8655-201ENSMUST00000221159 852 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Gm12020-201ENSMUST00000119030 2042 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Gm28386-201ENSMUST00000189147 1849 ntBASIC11.53□□□□□ -0.56
Sdc1P18828 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sdc1P18828 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sdc1P18828 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC11.52□□□□□ -0.56
Sdc1P18828 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Sdc1P18828 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC11.52□□□□□ -0.56
Sdc1P18828 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Sdc1P18828 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sdc1P18828 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Sdc1P18828 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
Sdc1P18828 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Sdc1P18828 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC11.52□□□□□ -0.57
Sdc1P18828 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Sdc1P18828 Olfr286-202ENSMUST00000205305 969 ntBASIC11.52□□□□□ -0.57
Sdc1P18828 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sdc1P18828 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms