Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC15.22■□□□□ 0.03
Vti1aO89116 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 AC165157.4-201ENSMUST00000220587 139 ntBASIC15.22■□□□□ 0.03
Vti1aO89116 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.22■□□□□ 0.03
Vti1aO89116 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.22■□□□□ 0.03
Vti1aO89116 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Vti1aO89116 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vti1aO89116 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Vti1aO89116 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Gm14042-201ENSMUST00000120139 833 ntBASIC15.21■□□□□ 0.03
Vti1aO89116 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.21■□□□□ 0.03
Vti1aO89116 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vti1aO89116 Gm43433-201ENSMUST00000196573 481 ntBASIC15.21■□□□□ 0.03
Vti1aO89116 Gm18018-201ENSMUST00000198273 408 ntBASIC15.21■□□□□ 0.03
Vti1aO89116 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.21■□□□□ 0.03
Vti1aO89116 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Vti1aO89116 Gm6180-201ENSMUST00000065243 498 ntBASIC15.21■□□□□ 0.03
Vti1aO89116 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.21■□□□□ 0.03
Vti1aO89116 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vti1aO89116 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vti1aO89116 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Vti1aO89116 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Vti1aO89116 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Vti1aO89116 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Vti1aO89116 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
Vti1aO89116 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vti1aO89116 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vti1aO89116 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vti1aO89116 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.2■□□□□ 0.02
Vti1aO89116 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Vti1aO89116 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Vti1aO89116 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.2■□□□□ 0.02
Vti1aO89116 Gm37230-201ENSMUST00000194491 818 ntBASIC15.2■□□□□ 0.02
Vti1aO89116 Olfr286-202ENSMUST00000205305 969 ntBASIC15.2■□□□□ 0.02
Vti1aO89116 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Vti1aO89116 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vti1aO89116 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vti1aO89116 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Vti1aO89116 Gm15163-201ENSMUST00000120749 1302 ntBASIC15.19■□□□□ 0.02
Vti1aO89116 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vti1aO89116 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vti1aO89116 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms