Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Mir433-201ENSMUST00000093564 124 ntBASIC12.54□□□□□ -0.4
Col5a1O88207 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Col5a1O88207 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Col5a1O88207 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.53□□□□□ -0.4
Col5a1O88207 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.53□□□□□ -0.4
Col5a1O88207 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Col5a1O88207 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC12.53□□□□□ -0.4
Col5a1O88207 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Gm6159-201ENSMUST00000191249 1724 ntBASIC12.53□□□□□ -0.4
Col5a1O88207 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.53□□□□□ -0.4
Col5a1O88207 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.53□□□□□ -0.4
Col5a1O88207 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Olfr284-202ENSMUST00000206647 966 ntBASIC12.53□□□□□ -0.4
Col5a1O88207 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col5a1O88207 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Col5a1O88207 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Col5a1O88207 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.52□□□□□ -0.4
Col5a1O88207 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Col5a1O88207 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col5a1O88207 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Col5a1O88207 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.52□□□□□ -0.41
Col5a1O88207 Gm12997-201ENSMUST00000120207 640 ntBASIC12.52□□□□□ -0.41
Col5a1O88207 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.52□□□□□ -0.41
Col5a1O88207 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Gm38223-201ENSMUST00000194484 695 ntBASIC12.52□□□□□ -0.41
Col5a1O88207 Nsd1-205ENSMUST00000224693 852 ntBASIC12.52□□□□□ -0.41
Col5a1O88207 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC12.52□□□□□ -0.41
Col5a1O88207 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Col5a1O88207 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col5a1O88207 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Col5a1O88207 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.51□□□□□ -0.41
Col5a1O88207 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.51□□□□□ -0.41
Col5a1O88207 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Col5a1O88207 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Gm8810-201ENSMUST00000172895 754 ntBASIC12.51□□□□□ -0.41
Col5a1O88207 Gm27331-201ENSMUST00000183705 60 ntBASIC12.51□□□□□ -0.41
Col5a1O88207 Gm29608-201ENSMUST00000190444 463 ntBASIC12.51□□□□□ -0.41
Col5a1O88207 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col5a1O88207 Gm43818-201ENSMUST00000200605 466 ntBASIC12.51□□□□□ -0.41
Col5a1O88207 Gm17823-201ENSMUST00000217830 1006 ntBASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms