Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.83□□□□□ -0.2
Cbx4O55187 Gm45751-201ENSMUST00000210185 1573 ntBASIC13.83□□□□□ -0.2
Cbx4O55187 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cbx4O55187 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.82□□□□□ -0.2
Cbx4O55187 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.82□□□□□ -0.2
Cbx4O55187 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.82□□□□□ -0.2
Cbx4O55187 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Cbx4O55187 Gm5566-201ENSMUST00000116118 459 ntBASIC13.82□□□□□ -0.2
Cbx4O55187 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.82□□□□□ -0.2
Cbx4O55187 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.82□□□□□ -0.2
Cbx4O55187 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.82□□□□□ -0.2
Cbx4O55187 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 AC131690.1-201ENSMUST00000218406 374 ntBASIC13.82□□□□□ -0.2
Cbx4O55187 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.82□□□□□ -0.2
Cbx4O55187 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 AC166574.6-201ENSMUST00000227889 1806 ntBASIC13.82□□□□□ -0.2
Cbx4O55187 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cbx4O55187 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cbx4O55187 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Cbx4O55187 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Cbx4O55187 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Cbx4O55187 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Cbx4O55187 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.81□□□□□ -0.2
Cbx4O55187 Gm9719-201ENSMUST00000162765 543 ntBASIC13.81□□□□□ -0.2
Cbx4O55187 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.81□□□□□ -0.2
Cbx4O55187 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.81□□□□□ -0.2
Cbx4O55187 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Gm8396-201ENSMUST00000057361 823 ntBASIC13.81□□□□□ -0.2
Cbx4O55187 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Cbx4O55187 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Cbx4O55187 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cbx4O55187 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
Cbx4O55187 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cbx4O55187 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 76.1 ms