Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Gm17330-201ENSMUST00000221047 165 ntBASIC16.48■□□□□ 0.23
Scn11aQ9R053 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Scn11aQ9R053 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm26513-201ENSMUST00000181802 2489 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm26083-201ENSMUST00000157904 193 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm16570-201ENSMUST00000161951 436 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm4857-201ENSMUST00000192718 785 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm6091-201ENSMUST00000098307 165 ntBASIC16.47■□□□□ 0.23
Scn11aQ9R053 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
Scn11aQ9R053 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Gm15371-201ENSMUST00000117057 784 ntBASIC16.46■□□□□ 0.23
Scn11aQ9R053 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC16.46■□□□□ 0.23
Scn11aQ9R053 Gm43068-201ENSMUST00000201095 1273 ntBASIC16.46■□□□□ 0.23
Scn11aQ9R053 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Gm9823-201ENSMUST00000051212 327 ntBASIC16.46■□□□□ 0.23
Scn11aQ9R053 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.46■□□□□ 0.23
Scn11aQ9R053 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn11aQ9R053 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn11aQ9R053 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn11aQ9R053 Gm27486-201ENSMUST00000184923 80 ntBASIC16.46■□□□□ 0.22
Scn11aQ9R053 Gm43118-201ENSMUST00000199149 775 ntBASIC16.46■□□□□ 0.22
Scn11aQ9R053 AC126253.1-201ENSMUST00000227974 824 ntBASIC16.46■□□□□ 0.22
Scn11aQ9R053 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn11aQ9R053 Gm24447-201ENSMUST00000083977 338 ntBASIC16.46■□□□□ 0.22
Scn11aQ9R053 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.22
Scn11aQ9R053 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Scn11aQ9R053 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn11aQ9R053 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn11aQ9R053 Gm8801-201ENSMUST00000173255 1064 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms