Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Gm6283-201ENSMUST00000182369 1000 ntBASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 AC238811.3-201ENSMUST00000225422 709 ntBASIC15.28■□□□□ 0.04
Trim54Q9ERP3 AC159006.1-201ENSMUST00000226396 258 ntBASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.28■□□□□ 0.04
Trim54Q9ERP3 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim54Q9ERP3 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim54Q9ERP3 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.26■□□□□ 0.03
Trim54Q9ERP3 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Gm5354-201ENSMUST00000182417 973 ntBASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Gm8602-201ENSMUST00000184045 607 ntBASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Gm17795-201ENSMUST00000214505 757 ntBASIC15.26■□□□□ 0.03
Trim54Q9ERP3 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim54Q9ERP3 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms