Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Gm29340-201ENSMUST00000188763 3854 ntBASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Gm20632-201ENSMUST00000176760 2427 ntBASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Gm15770-201ENSMUST00000117498 584 ntBASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Gm6983-201ENSMUST00000214912 628 ntBASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf1Q9EPU4 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Mir1894-201ENSMUST00000122802 81 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Gm7067-201ENSMUST00000207698 1249 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Gm18062-201ENSMUST00000208020 547 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Gm18055-201ENSMUST00000208254 547 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Gm17330-201ENSMUST00000221047 165 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 AC125117.1-201ENSMUST00000228121 468 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Gm42872-201ENSMUST00000200026 1967 ntBASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf1Q9EPU4 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Cpsf1Q9EPU4 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC19.27■□□□□ 0.67
Cpsf1Q9EPU4 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cpsf1Q9EPU4 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cpsf1Q9EPU4 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cpsf1Q9EPU4 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm12537-201ENSMUST00000119266 1002 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm12070-201ENSMUST00000119551 1002 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm12671-201ENSMUST00000119978 1002 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm13292-201ENSMUST00000120014 1000 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm12403-201ENSMUST00000121384 959 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm6244-201ENSMUST00000178732 841 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm10359-201ENSMUST00000180167 1002 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm12033-201ENSMUST00000180654 1002 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm5559-201ENSMUST00000180755 1002 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm4335-201ENSMUST00000182581 1004 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm27892-201ENSMUST00000185017 106 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Gm17870-201ENSMUST00000219489 1174 ntBASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf1Q9EPU4 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms