Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Vps53Q8CCB4 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Gm29541-201ENSMUST00000191351 678 ntBASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Gtpbp10-211ENSMUST00000198799 648 ntBASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Gm7730-201ENSMUST00000212486 454 ntBASIC16.46■□□□□ 0.23
Vps53Q8CCB4 AC155729.1-201ENSMUST00000227758 544 ntBASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Vps53Q8CCB4 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Vps53Q8CCB4 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Vps53Q8CCB4 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Vps53Q8CCB4 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Vps53Q8CCB4 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm13015-201ENSMUST00000118674 204 ntBASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm14767-201ENSMUST00000121559 586 ntBASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm28630-201ENSMUST00000187806 498 ntBASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Vps53Q8CCB4 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC16.44■□□□□ 0.22
Vps53Q8CCB4 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms