Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ube3dQ8BX13 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Ube3dQ8BX13 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Ube3dQ8BX13 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Ube3dQ8BX13 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ube3dQ8BX13 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ube3dQ8BX13 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.39
Ube3dQ8BX13 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC12.58□□□□□ -0.4
Ube3dQ8BX13 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 AC164565.1-201ENSMUST00000217520 1484 ntBASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Gm42872-201ENSMUST00000200026 1967 ntBASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ube3dQ8BX13 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Gm14057-201ENSMUST00000120631 482 ntBASIC12.57□□□□□ -0.4
Ube3dQ8BX13 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ube3dQ8BX13 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms