Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Gm37015-201ENSMUST00000192763 1521 ntBASIC13.38□□□□□ -0.27
Cdx2P43241 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm12485-201ENSMUST00000119641 291 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.37□□□□□ -0.27
Cdx2P43241 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm38671-201ENSMUST00000200573 130 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 Gm44974-201ENSMUST00000206387 1279 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 AC159896.2-201ENSMUST00000214753 269 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 AC154319.1-201ENSMUST00000216330 312 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 AL589735.1-201ENSMUST00000224353 270 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Cdx2P43241 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdx2P43241 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdx2P43241 Gm29340-201ENSMUST00000188763 3854 ntBASIC13.37□□□□□ -0.27
Cdx2P43241 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Gm14451-201ENSMUST00000121581 1542 ntBASIC13.36□□□□□ -0.27
Cdx2P43241 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdx2P43241 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdx2P43241 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Cdx2P43241 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
Cdx2P43241 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Gm27772-201ENSMUST00000184900 187 ntBASIC13.36□□□□□ -0.27
Cdx2P43241 AC155729.1-201ENSMUST00000227758 544 ntBASIC13.36□□□□□ -0.27
Cdx2P43241 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Gm10012-201ENSMUST00000078252 192 ntBASIC13.36□□□□□ -0.27
Cdx2P43241 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
Cdx2P43241 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdx2P43241 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cdx2P43241 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Cdx2P43241 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdx2P43241 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC13.36□□□□□ -0.27
Cdx2P43241 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Cdx2P43241 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms