Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.34■□□□□ 0.21
Col1a1P11087 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.34■□□□□ 0.21
Col1a1P11087 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Col1a1P11087 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Col1a1P11087 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Gm13342-201ENSMUST00000121055 207 ntBASIC16.34■□□□□ 0.21
Col1a1P11087 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC16.34■□□□□ 0.21
Col1a1P11087 Gm42627-201ENSMUST00000197347 224 ntBASIC16.34■□□□□ 0.21
Col1a1P11087 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC16.34■□□□□ 0.21
Col1a1P11087 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col1a1P11087 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col1a1P11087 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col1a1P11087 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Col1a1P11087 AC115735.4-201ENSMUST00000227460 1944 ntBASIC16.33■□□□□ 0.21
Col1a1P11087 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col1a1P11087 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col1a1P11087 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col1a1P11087 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC16.33■□□□□ 0.2
Col1a1P11087 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 AC154412.1-201ENSMUST00000226540 2786 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Col1a1P11087 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC16.33■□□□□ 0.2
Col1a1P11087 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC16.33■□□□□ 0.2
Col1a1P11087 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC16.33■□□□□ 0.2
Col1a1P11087 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col1a1P11087 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 Gm18056-201ENSMUST00000207670 568 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 Gm18061-201ENSMUST00000208350 562 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 Gm18063-201ENSMUST00000208529 568 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 Gm18052-201ENSMUST00000208750 559 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 AC159747.1-201ENSMUST00000219903 265 ntBASIC16.33■□□□□ 0.2
Col1a1P11087 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC16.33■□□□□ 0.2
Col1a1P11087 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC16.33■□□□□ 0.2
Col1a1P11087 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col1a1P11087 Gm45630-201ENSMUST00000210243 1911 ntBASIC16.32■□□□□ 0.2
Col1a1P11087 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC16.32■□□□□ 0.2
Col1a1P11087 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Gm26083-201ENSMUST00000157904 193 ntBASIC16.32■□□□□ 0.2
Col1a1P11087 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Cts7-204ENSMUST00000225321 1257 ntBASIC16.32■□□□□ 0.2
Col1a1P11087 Snora73a-201ENSMUST00000082453 205 ntBASIC16.32■□□□□ 0.2
Col1a1P11087 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Col1a1P11087 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Col1a1P11087 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col1a1P11087 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.32■□□□□ 0.2
Col1a1P11087 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col1a1P11087 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.32■□□□□ 0.2
Col1a1P11087 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col1a1P11087 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col1a1P11087 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC16.31■□□□□ 0.2
Col1a1P11087 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col1a1P11087 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Gm29608-201ENSMUST00000190444 463 ntBASIC16.31■□□□□ 0.2
Col1a1P11087 Gm44364-201ENSMUST00000198368 141 ntBASIC16.31■□□□□ 0.2
Col1a1P11087 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC16.31■□□□□ 0.2
Col1a1P11087 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Col1a1P11087 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.31■□□□□ 0.2
Col1a1P11087 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.31■□□□□ 0.2
Col1a1P11087 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC16.31■□□□□ 0.2
Col1a1P11087 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms