Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC16.67■□□□□ 0.26
Col3a1P08121 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC16.67■□□□□ 0.26
Col3a1P08121 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Gm27486-201ENSMUST00000184923 80 ntBASIC16.67■□□□□ 0.26
Col3a1P08121 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC16.67■□□□□ 0.26
Col3a1P08121 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Gm13050-201ENSMUST00000122149 1345 ntBASIC16.67■□□□□ 0.26
Col3a1P08121 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col3a1P08121 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Gm5687-201ENSMUST00000118252 640 ntBASIC16.67■□□□□ 0.26
Col3a1P08121 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Rassf8-202ENSMUST00000058538 1131 ntBASIC16.67■□□□□ 0.26
Col3a1P08121 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
Col3a1P08121 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col3a1P08121 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Col3a1P08121 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC16.66■□□□□ 0.26
Col3a1P08121 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC16.66■□□□□ 0.26
Col3a1P08121 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.66■□□□□ 0.26
Col3a1P08121 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.66■□□□□ 0.26
Col3a1P08121 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col3a1P08121 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col3a1P08121 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 AC167013.2-201ENSMUST00000228520 2684 ntBASIC16.65■□□□□ 0.26
Col3a1P08121 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 Gm45331-201ENSMUST00000209868 554 ntBASIC16.65■□□□□ 0.26
Col3a1P08121 AC073947.2-201ENSMUST00000215888 1130 ntBASIC16.65■□□□□ 0.26
Col3a1P08121 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col3a1P08121 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.65■□□□□ 0.26
Col3a1P08121 Gm17330-201ENSMUST00000221047 165 ntBASIC16.65■□□□□ 0.26
Col3a1P08121 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col3a1P08121 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col3a1P08121 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms