Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm24721-201ENSMUST00000103849 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm28018-201ENSMUST00000103869 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm26399-201ENSMUST00000103937 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm25349-201ENSMUST00000177728 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm23616-201ENSMUST00000177797 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm25871-201ENSMUST00000177816 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm24752-201ENSMUST00000178240 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm24496-201ENSMUST00000178287 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm25649-201ENSMUST00000178476 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm25548-201ENSMUST00000178681 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm23147-201ENSMUST00000178841 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm26095-201ENSMUST00000179270 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm22171-201ENSMUST00000179283 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm23936-201ENSMUST00000179354 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm22619-201ENSMUST00000179516 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm25255-201ENSMUST00000179579 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm24755-201ENSMUST00000179691 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm26506-201ENSMUST00000179692 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm25086-201ENSMUST00000179931 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm23243-201ENSMUST00000180047 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm24659-201ENSMUST00000180212 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm24169-201ENSMUST00000180244 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm23689-201ENSMUST00000180354 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm27359-201ENSMUST00000184153 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm27785-201ENSMUST00000184268 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm27466-201ENSMUST00000184396 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm27703-201ENSMUST00000184836 110 ntBASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Trim3Q9R1R2 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Trim3Q9R1R2 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Trim3Q9R1R2 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Trim3Q9R1R2 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Trim3Q9R1R2 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trim3Q9R1R2 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Trim3Q9R1R2 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms