Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm29199-201ENSMUST00000187766 775 ntBASIC16.51■□□□□ 0.23
Scn11aQ9R053 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm38230-201ENSMUST00000193572 1159 ntBASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Ankra2-208ENSMUST00000226100 1476 ntBASIC16.51■□□□□ 0.23
Scn11aQ9R053 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm11814-201ENSMUST00000119515 929 ntBASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm8810-201ENSMUST00000172895 754 ntBASIC16.51■□□□□ 0.23
Scn11aQ9R053 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC16.51■□□□□ 0.23
Scn11aQ9R053 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn11aQ9R053 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC16.5■□□□□ 0.23
Scn11aQ9R053 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Gm27514-201ENSMUST00000183692 110 ntBASIC16.5■□□□□ 0.23
Scn11aQ9R053 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Gm44397-201ENSMUST00000195950 113 ntBASIC16.5■□□□□ 0.23
Scn11aQ9R053 Gm5161-201ENSMUST00000075243 853 ntBASIC16.5■□□□□ 0.23
Scn11aQ9R053 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn11aQ9R053 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Gm12203-201ENSMUST00000118235 598 ntBASIC16.49■□□□□ 0.23
Scn11aQ9R053 Gm12209-201ENSMUST00000120089 596 ntBASIC16.49■□□□□ 0.23
Scn11aQ9R053 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.49■□□□□ 0.23
Scn11aQ9R053 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn11aQ9R053 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms