Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.67□□□□□ -0.38
Trem1Q9JKE2 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trem1Q9JKE2 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 AC117588.1-201ENSMUST00000228510 999 ntBASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 AC154404.1-201ENSMUST00000223601 2077 ntBASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Trem1Q9JKE2 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Gm38273-201ENSMUST00000194987 2382 ntBASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trem1Q9JKE2 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.39
Trem1Q9JKE2 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms