Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm21470-201ENSMUST00000187680 696 ntBASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 AC139580.1-202ENSMUST00000223574 928 ntBASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim54Q9ERP3 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.31■□□□□ 0.04
Trim54Q9ERP3 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Cdk7-205ENSMUST00000225990 1159 ntBASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Gm14452-201ENSMUST00000118680 1632 ntBASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim54Q9ERP3 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Gm11918-201ENSMUST00000121660 179 ntBASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Gm43433-201ENSMUST00000196573 481 ntBASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Gm19220-201ENSMUST00000222682 803 ntBASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Gm15222-202ENSMUST00000228667 1726 ntBASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim54Q9ERP3 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim54Q9ERP3 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms