Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Mir8102-201ENSMUST00000184148 139 ntBASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Gm9063-201ENSMUST00000223299 582 ntBASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Vps28Q9D1C8 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Gm5320-201ENSMUST00000207163 1519 ntBASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps28Q9D1C8 BC001981-202ENSMUST00000191393 1545 ntBASIC14.51□□□□□ -0.09
Vps28Q9D1C8 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps28Q9D1C8 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Gm12428-201ENSMUST00000119844 727 ntBASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Mir7684-201ENSMUST00000183858 60 ntBASIC14.49□□□□□ -0.09
Vps28Q9D1C8 Gm7775-201ENSMUST00000218871 853 ntBASIC14.49□□□□□ -0.09
Vps28Q9D1C8 AC121804.3-201ENSMUST00000223420 295 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms