Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm30238-201ENSMUST00000195528 2603 ntBASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm5177-201ENSMUST00000183092 997 ntBASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 AC131743.5-201ENSMUST00000220775 1618 ntBASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx28Q9CWT6 Carlr-201ENSMUST00000181515 2574 ntBASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx28Q9CWT6 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Thap2-203ENSMUST00000218989 527 ntBASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Gm42769-201ENSMUST00000198576 1659 ntBASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx28Q9CWT6 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms