Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Smc1aQ9CU62 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Gm2810-201ENSMUST00000118681 990 ntBASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Gm15693-201ENSMUST00000120470 637 ntBASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Smc1aQ9CU62 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Gm9947-201ENSMUST00000067599 2920 ntBASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Gm42632-201ENSMUST00000201707 2411 ntBASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Gm16026-204ENSMUST00000162652 683 ntBASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Gm9824-201ENSMUST00000178707 561 ntBASIC15.85■□□□□ 0.13
Smc1aQ9CU62 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Smc1aQ9CU62 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm6415-201ENSMUST00000118488 348 ntBASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm27437-201ENSMUST00000183429 107 ntBASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.84■□□□□ 0.13
Smc1aQ9CU62 Gm38225-201ENSMUST00000194001 393 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms