Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Gm5866-201ENSMUST00000177881 973 ntBASIC15.69■□□□□ 0.1
Trim47Q8C0E3 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.69■□□□□ 0.1
Trim47Q8C0E3 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Gm20445-201ENSMUST00000061905 565 ntBASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Syt7-205ENSMUST00000224135 1557 ntBASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim47Q8C0E3 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.68■□□□□ 0.1
Trim47Q8C0E3 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.68■□□□□ 0.1
Trim47Q8C0E3 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim47Q8C0E3 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Gm21470-201ENSMUST00000187680 696 ntBASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim47Q8C0E3 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Trim47Q8C0E3 Gm21854-201ENSMUST00000179901 471 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms